Scaffold Ga0209500_10000734

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10000734
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27105
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025611	Metagenome	201	Y
F025740	Metagenome	200	Y
F034180	Metagenome / Metatranscriptome	175	Y
F042171	Metagenome	158	Y
F059635	Metagenome	133	Y
F065777	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000073415	F025611	GAG	MRIALCFSGQNRTGHATADNIKRYVGDLLPDCDVFAHFWDSETRGTGYANRLGAVSTDAEWHSPQTTDPEKNVEFFRAWAPRTIMTEEYDLQPNRPKWGGRRWDPVEGKWHVSMWRSLYEANKLKMDYAQKNQIVYDYTVRLRSDLVFDSSKSLKDDLALIQNPNMFLFGDHYAIWPIHGMTRVEDILWIGPSRLMDQVSTYYATYTNTVSNIDDPQQPGYQDWQWHSAHWITHQLGYQFYALANNQMRIYTEQDVELGIDPLDPGFGPPGRPGAFHNKNI
Ga0209500_1000073426	F059635	N/A	VYNKENRVNFKSCWADVKLFVLNAWSKYSSWVKLFFEDLTHDLKLDENYDLRLFVFVFVYLVVSAVGMYNIAHLAAFFYIIWLLERKV
Ga0209500_1000073431	F034180	AGGAG	VNIKKLSLAVAGALLVVGCAGNQGVVKNADLKPSTDSIRPKPVSTVFHRPAGIMTISFSPEGQFLEITSKGTAPIAGNNAFSIEQAIQVAQLRAKRNIAEFISTQLDTQRTVKVLSSSVQKSLEDTTNGMGEEVKVDDKDFDVNGDPVVTRAYDDGSGNIKNPSVANVKEGNPNTNSEKVAEMVKESIHTSSKALLRGIMISDEKIDQEGRTVVVEVRTGINTVNASSQLRVLMEAGK
Ga0209500_1000073438	F025740	AGGAGG	VTDRQTHWTIFFIAVLTGLILLTTVQKVNDQLDRSRLAVVDMQKQIDKLKAEDEDLKHLIVKLTNANINLNKDLDTTQELQRKQAQVILELKKGKRK
Ga0209500_1000073439	F065777	AGG	MIEELKQLTTKEVMTMIEGSVKVIVDNPDYFYSSGVGPQYSKLTPRGCDMVLKTMTALLPLLAQAKERDLDERAKSITWNSLQEEDIQ
Ga0209500_100007347	F042171	AGG	LDEELHYVPHEVVGTIRKLASLASDPRSDGFTQCTYKHDLYVLKCFIEDEYKRCPEFPQQEAEWEKERLMEILKRK