NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000721

Scaffold Ga0209500_10000721


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000721 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27300
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (78.72%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F010521Metagenome302Y
F014955Metagenome258Y
F029048Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000072114F010521N/AMKLSPAIIRNLYSAIYCMKPFCSYKNMPLPEEIEFIVDKGEDMGTYLYDPGSDDYEHTITISEVRCGTLDTVLKVLLHECIHMSRHKSSRWTHHDKEFRKRAHRIWSEIGFVDPLEL
Ga0209500_1000072120F014955GGAGMDIEKYIVAATGLGYLVVGLAQYAKGSPSNAFIWLGYAAAQIGLWMNLK
Ga0209500_1000072124F007166N/AMAFINKGNDMDEMHEVMNEMEERLEIALNNMEYGTDISADDIDVIRAACGKPNNKRNVLLQTVFNDFGNVFGGSK
Ga0209500_1000072127F029048AGGAGMLSHIKDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLRDVIQVCADCCVNTTDREAILELLN

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