NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10000376

Scaffold Ga0209500_10000376


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10000376 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38823
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (71.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001443Metagenome / Metatranscriptome693Y
F004641Metagenome / Metatranscriptome429Y
F011824Metagenome286Y
F035736Metagenome / Metatranscriptome171Y
F068392Metagenome124Y
F104705Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000037627F001443GAGMPMYETTVKTPTGETKDRVFAPNAQEAKKLFEQRHGPRNVPYIPHMIPS
Ga0209500_100003763F004641AGGAMADEIKESAKGAFIEKLLFALLPLLIGSTGYLISALGSLQHDVTILNQKVSLVVTTDNKQSVNSGAELAREKLRQDLEKEIQVNRDQIHVNRMHIAVLEEKIKVDKKISNEKMGK
Ga0209500_1000037648F011824N/AMSLSTYRSSEPLFTVIHRDPVANDRLTRWSKTSRSIQARVEDNRMHIYDHNTFSLFMMTWTHGWDHVVIWDPWAKRHITI
Ga0209500_1000037649F068392N/AMLDDAELDQAVRLAILNLMVVLYDCGITEIHIGGVMRILGVSNDKAQKHDNERLVLDQEFVKYVEQINEPRPVNQSLH
Ga0209500_1000037658F104705GGAGGMTRKHFVAMAREIAQMTDRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV
Ga0209500_1000037660F035736AGGAGMATVNYKVGDDISYAIGGDRYYDGKIARITKRFIFSDRGMKYTQKIAPNGDAYYTQTRCKYCYLIPGVQEYMDPHF
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