Basic Information | |
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Taxon OID | 3300027782 Open in IMG/M |
Scaffold ID | Ga0209500_10000376 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38823 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (71.64%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001443 | Metagenome / Metatranscriptome | 693 | Y |
F004641 | Metagenome / Metatranscriptome | 429 | Y |
F011824 | Metagenome | 286 | Y |
F035736 | Metagenome / Metatranscriptome | 171 | Y |
F068392 | Metagenome | 124 | Y |
F104705 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209500_1000037627 | F001443 | GAG | MPMYETTVKTPTGETKDRVFAPNAQEAKKLFEQRHGPRNVPYIPHMIPS |
Ga0209500_100003763 | F004641 | AGGA | MADEIKESAKGAFIEKLLFALLPLLIGSTGYLISALGSLQHDVTILNQKVSLVVTTDNKQSVNSGAELAREKLRQDLEKEIQVNRDQIHVNRMHIAVLEEKIKVDKKISNEKMGK |
Ga0209500_1000037648 | F011824 | N/A | MSLSTYRSSEPLFTVIHRDPVANDRLTRWSKTSRSIQARVEDNRMHIYDHNTFSLFMMTWTHGWDHVVIWDPWAKRHITI |
Ga0209500_1000037649 | F068392 | N/A | MLDDAELDQAVRLAILNLMVVLYDCGITEIHIGGVMRILGVSNDKAQKHDNERLVLDQEFVKYVEQINEPRPVNQSLH |
Ga0209500_1000037658 | F104705 | GGAGG | MTRKHFVAMAREIAQMTDRKSARIAAEAFAQVARTTNSRFDTQRFLTACGV |
Ga0209500_1000037660 | F035736 | AGGAG | MATVNYKVGDDISYAIGGDRYYDGKIARITKRFIFSDRGMKYTQKIAPNGDAYYTQTRCKYCYLIPGVQEYMDPHF |
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