Scaffold Ga0209709_10030083

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209709_10030083

Scaffold Ga0209709_10030083

Overview

Basic Information
Taxon OID	3300027779 Open in IMG/M
Scaffold ID	Ga0209709_10030083 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3388
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)		Depth (m)	79
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032827	Metagenome	179	Y
F096642	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209709_1003008311	F032827	AGGA	MKAIIEIELGNDSFGNCATERLFEIRNVVERLMDNAERIMVEDVGDFTTAQDANGNTVARMDIVE
Ga0209709_100300838	F096642	AGGA	MSHSLWYTRRMKNMRNENKNELTFEGWHSDEKETFTGVNNDSFGNDCRDHDQDAWNYEIDESDCWK

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