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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027779 Open in IMG/M |
| Scaffold ID | Ga0209709_10007686 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8091 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Arctic Ocean: Canada Basin | |||||||
| Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017731 | Metagenome | 239 | N |
| F092353 | Metagenome | 107 | N |
| F098661 | Metagenome / Metatranscriptome | 103 | N |
| F099872 | Metagenome | 103 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209709_1000768610 | F098661 | N/A | MSKGLLLGGGALMLCLLLIIFIAIIYFLTRPEKETEKETDESPTITDAGVDLVLNPGKETDKVEEYRIFKTEYALGEASAKNIDIKLKWTNGPTFTSVTSLIFVHESGTKKLRDNVKTTDNIESNASNELLFKGTDLTSEEVVGSNTIKIYWDEVKESNILKTISFTITQEHLDTPFNLTSVKNITIPVQLSSSQTATGDVVSTYTNYYILPYFTDTPVYNRKVQGDTNDGFNIIKNGSKQSIDGVDKFYIVQAIGKQFLSKDPDGNSLLRYDKKFKNQNEIFGNMNAVVKSAISVREAKPFKYEFIVKHLDYMATVPQHNLAAHIENVKLYDFNDTLIKTITNNDIDFHKAPTHKINKSDYLGAWKSNKYNVGDKLFTITSDKPVHMIKVRYGRPRYAPGWTIKENGIVRFEDMRNHGTEETPTPVDYTYTLSKFNDIGDLSYSGYYDISEMEDIGLEYGLMAPNNIHDWQYDINTYEDCRQRAGEKGYNAFGFQQTGTKYCWLRQVPGTGGYTVTGLQSTGEGGKKDGHVSGCAVKGKKVSNNCQQLFHYGGDSNLGRDGRNACNMTDDDRKYACDNDSELVGIGSGNTCGHKFYKTDKGKGSTISSTDEYTKFYSCQTKNYV |
| Ga0209709_100076865 | F017731 | N/A | MLRPPLSSTIFPRLNTPRRVHTNVVSMENGSVRLQNIEITIERTRGRCSLSYGRQEKAYIKVLNQLEKERSEILKGTQEKSCDNTNDSCSE |
| Ga0209709_100076866 | F092353 | N/A | MIVVANNPRVMVVTCKKNKGGTQKLPKYVTYTETEKLKKSNNKKNINPIKKFLIGIFGEEIDYDKFNKESKWSIRKEEDDHDRETKK |
| Ga0209709_100076869 | F099872 | N/A | MALIAGAGLCLLSTMSSSLAGLVYYLQDPEPATPTSGDDDIPQTQTKTYRKNMEIMYSTDCDETSNVSATEGTIDTSFGKSIKWTAPNIESTGTLKSGTGEKIKKLHLRNVVISTGSYKQHDENTDSEPVTAQVTDEKFCGLKLIDLCDDDKKYITDLDITYKPVEDNGQKALKPIYTSLWANKCVTDDPDSKQVQATEINGMCDHSNLDLKIDNDYENEQREEFKKSTLMEIENVKLVSGSYKRVKSDGTEEDVTMESKTYNGKHTINFCGDDGTEWAKDLKVDFEGIPESSTETYKIEGYRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |