NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209829_10013209

Scaffold Ga0209829_10013209


Overview

Basic Information
Taxon OID3300027777 Open in IMG/M
Scaffold IDGa0209829_10013209 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_140205_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5100
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011388Metagenome291Y
F026257Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0209829_100132092F011388AGAAGLIQASSVAADLGRGRGDIAFFADRWLGIKGNPGQLAWWAACAEREEDGFRPKYITTVVSAGNRAGKTLAMAVVCLHHALYKMGVKNPIPEDQGSAREWLNAPYEWYHIGIQQETADLVHREIESILDANHPAQKGRGCPLTKELGKVIETRKKYRGEYAWVKFSPMLGGANIHFRTTQDKAKALLGKDMNGISFDEAAFEPHLLMIYQEVLNLRRLSTGGPLHFVGTPTEGINDYAELWHRGDPENPMREEKFISFRLSTRDNVGYGLTQGNFDDVVKQQAEYLIPQNIDGYFIEARNAFFWSQSVIACFRDIEEETPPARRGKYVQGVDPGISHDATWAITLDISTRGKLRGVRVRKRGGKQSISSVVNMVREGHLLYQQEGAYCTTIVDSTGLGGRLFQQEFSMIKPLRGFDFGGTKAKKVELLNDLKAVIDKGQIEFPAGGIWDELRRQLLMYKLEDKKLEQDAVMALAIAVRHALRNPERAVENPTFAYFGASD
Ga0209829_100132095F026257N/AMRDGLPDTKISEWLTDAGQYVSRITLGKHRREHLMDDHERLRQTAIKVMEKQKKTIKTSGGDLATLVRDFVEAAVQEGAMVPTLTEGLRAQEMIDRRQEKTADRDVALQLAEILGGSTASYQVIEATEIKQVEGSHE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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