Scaffold Ga0209433_10009484

Overview

Basic Information

• Taxon OID: 3300027774
• Scaffold ID: Ga0209433_10009484
• Source Dataset Name: Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3097
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Oxygen Minimum Zone In The Mesopelagic Equatorial Pacific

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 0.0
  • Long. (^o): -158.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209433_100094844	F015102	GGA	MQRESDYAEDKNAPFDDVTHWVGNLPSKDTDSNERPIKRYSWWQTKSNILRKKLGVETKRED
Ga0209433_100094846	F027536	GGAGG	MRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDEEARLHEQEQKLYEKDREEGVEWVPNF
Ga0209433_100094847	F029123	AGGAG	MSYEVWFGKDGKWFGYHSFKHRMDAVRYELRYLKMFPNLTVELRRREHAS