Scaffold Ga0209810

Basic Information
Taxon OID	3300027773 Open in IMG/M
Scaffold ID	Ga0209810_1000124 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209810_1000124 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	232486
Total Scaffold Genes	271 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	175 (64.58%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

232486

Total Scaffold Genes

271 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

175 (64.58%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002581	Metagenome / Metatranscriptome	546	Y
F003586	Metagenome / Metatranscriptome	478	Y
F012204	Metagenome / Metatranscriptome	282	Y
F019694	Metagenome / Metatranscriptome	228	Y
F026535	Metagenome / Metatranscriptome	197	Y
F044625	Metagenome / Metatranscriptome	154	Y
F081055	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_1000124113	F044625	AGG	MASIKDVEQVAEDLERLVGELRSELSSNADFERLIQISDEIAEHADNAAQTFSSVNETLMSRIRELKGGGESKRSQTRQKAASSS
Ga0209810_1000124136	F002581	AGAAGG	MSRRFLTILGFGTGVLAGTVLFRRTLARRRERVDVYFDDGSMVSFVQGSAEADGLLPVARGVLATARR
Ga0209810_100012424	F081055	N/A	MTVVRLPPWSEVLRGPWALRLRSGGSGAWLMRSEADSVPELECRFLDSRAARTASGALEELEQAFELQVPLGGFADLPDAVAGDATIALLVLDTDRLLSDEPEALAPLVAALRDASERRALRVIFQARELTPDAEAVLTEFGVAEIAA
Ga0209810_1000124254	F012204	AGGA	MYEPGLDRHEWESEMASLEDDLRDEPAAALPELDDLVARMLEETGYDIADPVVREGDERELVAEFLAAREIKDAYERGSDELSAGDIGAAVNGYRAIYDHLVQNRAAAGGDITQPGEPEA
Ga0209810_1000124266	F003586	GGAG	MAKKKMTEAERAEWKLHLEQMRANAERTRELAERAQAKLDARLRHP
Ga0209810_100012429	F019694	GAG	VAAATHRGSEKLGVFAFAIGLLVVIVGGAFAAGYLIGRILL
Ga0209810_100012480	F026535	GGA	MATCAGCGNDIERRFRFCPWCGAVQRRKLVEFFWPHSNSPGRALRVTRYIGDDPQVRFSVWDDGVARAAVSLEEEEALRLAAFLEETSARRYDTAETL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209810_1000124

Overview

Ecosystem & Geography

Associated Families

Sequences