NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000079

Scaffold Ga0209810_1000079


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000079 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)291971
Total Scaffold Genes318 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)199 (62.58%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003606Metagenome / Metatranscriptome477Y
F005548Metagenome / Metatranscriptome397Y
F005991Metagenome / Metatranscriptome384Y
F007088Metagenome / Metatranscriptome358Y
F020333Metagenome / Metatranscriptome224Y
F021819Metagenome / Metatranscriptome217Y
F052789Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_1000079139F052789AGGVSTALGLLAFVAYVLVIVGVAAAVTWIVVRVTPTHKPDGSAQS
Ga0209810_1000079260F003606GAGVRPRSANEWRDFWRDGGERELHARLGEFAPYSVRIATLLGSNAPERALVAELGRIREHELGGPPDPETDAAVAARIYAWFEAASLAR
Ga0209810_1000079273F020333GGAGGMIGVGIAFIIVGIIFLFIIPWVGIAVGIVGLVLAILWVAGFGRRAVERDTPADQPRL
Ga0209810_1000079285F021819N/AVLAAVPHAVVTALLLVAAIGPVLAFAWFAWWFLRAGKRYDDRERAAGRRPPPGF
Ga0209810_1000079296F007088GGAGVSRPMQLFLRDPSYTDRLAAFLSSVGRPAVVGAPDRVDLDASADDPQGLELELHLRVWRVLYPDADVELAGLAP
Ga0209810_1000079297F005548N/AVLRWLLSLFGRGRKHAASSIREAEAYARSYGERSGEIVSVVRQEPKPIPRRTGDMTGELLRLAFEAKLDARGKATT
Ga0209810_100007955F005991GAGGMRSYGTYDASRGLTLALAAALAGLALWGAAEVGTQTTGRFWVAMAIVAGAGLLLALANHVGTWTKGLRMRISPSTFVLAFLPVLVCVGWILVATQPGTGWQEGRLDSWSNSIGILGLVKTIALWHGVLAFGLGLVLGLSFDGVPAPVEEPGPAYAGAAAPATDEPVAAERRRTRRRRPVADAPPAGGPGRPTDAPAATPTDETTRTHSRVPGP

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