Basic Information | |
---|---|
Taxon OID | 3300027773 Open in IMG/M |
Scaffold ID | Ga0209810_1000079 Open in IMG/M |
Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 291971 |
Total Scaffold Genes | 318 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 199 (62.58%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Pennsylvania, Centralia | |||||||
Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003606 | Metagenome / Metatranscriptome | 477 | Y |
F005548 | Metagenome / Metatranscriptome | 397 | Y |
F005991 | Metagenome / Metatranscriptome | 384 | Y |
F007088 | Metagenome / Metatranscriptome | 358 | Y |
F020333 | Metagenome / Metatranscriptome | 224 | Y |
F021819 | Metagenome / Metatranscriptome | 217 | Y |
F052789 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209810_1000079139 | F052789 | AGG | VSTALGLLAFVAYVLVIVGVAAAVTWIVVRVTPTHKPDGSAQS |
Ga0209810_1000079260 | F003606 | GAG | VRPRSANEWRDFWRDGGERELHARLGEFAPYSVRIATLLGSNAPERALVAELGRIREHELGGPPDPETDAAVAARIYAWFEAASLAR |
Ga0209810_1000079273 | F020333 | GGAGG | MIGVGIAFIIVGIIFLFIIPWVGIAVGIVGLVLAILWVAGFGRRAVERDTPADQPRL |
Ga0209810_1000079285 | F021819 | N/A | VLAAVPHAVVTALLLVAAIGPVLAFAWFAWWFLRAGKRYDDRERAAGRRPPPGF |
Ga0209810_1000079296 | F007088 | GGAG | VSRPMQLFLRDPSYTDRLAAFLSSVGRPAVVGAPDRVDLDASADDPQGLELELHLRVWRVLYPDADVELAGLAP |
Ga0209810_1000079297 | F005548 | N/A | VLRWLLSLFGRGRKHAASSIREAEAYARSYGERSGEIVSVVRQEPKPIPRRTGDMTGELLRLAFEAKLDARGKATT |
Ga0209810_100007955 | F005991 | GAGG | MRSYGTYDASRGLTLALAAALAGLALWGAAEVGTQTTGRFWVAMAIVAGAGLLLALANHVGTWTKGLRMRISPSTFVLAFLPVLVCVGWILVATQPGTGWQEGRLDSWSNSIGILGLVKTIALWHGVLAFGLGLVLGLSFDGVPAPVEEPGPAYAGAAAPATDEPVAAERRRTRRRRPVADAPPAGGPGRPTDAPAATPTDETTRTHSRVPGP |
⦗Top⦘ |