Scaffold Ga0209086_10102369

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10102369
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012867	Metagenome	276	Y
F029756	Metagenome	187	Y
F065781	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_101023692	F012867	GGAG	MKDFVYEQQRESITEEWGDEISQPLLSEKLNVPRVSYRIYYSKDDLTRRIFIFRGNCTPAVTEIMLGLGFTFAKDGDTENIPDQSVEEVEQ
Ga0209086_101023693	F065781	GGAG	MTEGEQAGRWAIVYLLMAGAAAYFTIVMIVFSFVKDIFWS
Ga0209086_101023695	F029756	GGAG	MNKRKITTRIMLDGVVDNTYTQMRQVYTDDKGEYVNCDRNRYHIVNDSFDIVYTTGRAFTFAEVLKDFV