Basic Information | |
---|---|
Taxon OID | 3300027770 Open in IMG/M |
Scaffold ID | Ga0209086_10099105 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1496 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000847 | Metagenome / Metatranscriptome | 861 | N |
F001129 | Metagenome / Metatranscriptome | 768 | Y |
F032581 | Metagenome / Metatranscriptome | 179 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209086_100991051 | F032581 | N/A | ITRLTDKVKNDAEWYSERITRYLMENRNSYPLWNSPPSALDTIYPNATNYRTGMVLDRNRRMGISNLDYPYPYGQFGACNDC |
Ga0209086_100991052 | F000847 | N/A | MSWIKIKQALLDLANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPV |
Ga0209086_100991053 | F001129 | AGGTGG | MEFVDAAVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYAMSSKSVSAGIVISGRNGGKITAVTPSAGSVIGYTFL |
⦗Top⦘ |