Basic Information | |
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Taxon OID | 3300027770 Open in IMG/M |
Scaffold ID | Ga0209086_10017945 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4524 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014486 | Metagenome / Metatranscriptome | 262 | Y |
F024954 | Metagenome / Metatranscriptome | 203 | N |
F056412 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209086_100179453 | F056412 | N/A | MNKKLTKYEILIANLEKASADLKKASEESQKRLNESFAKYQEKVSVAHHNSMMVNEKQIEEIPCNSAEIC |
Ga0209086_100179457 | F024954 | N/A | MKEQMKNTIESLVVGKYYQIKNHIAICEMLNSTSNKKCLSRISGVGSVIAFYDEVTEVEMTPALLKECEERKNGTMSFIGDFNATSEYKGD |
Ga0209086_100179459 | F014486 | N/A | MNKIQKLLNENLESFYPWSDNDTPPLDTNKKTFVEKEKETLEDFEGWRACM |
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