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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027770 Open in IMG/M |
| Scaffold ID | Ga0209086_10012065 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5755 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010463 | Metagenome | 303 | N |
| F024265 | Metagenome | 206 | N |
| F027777 | Metagenome / Metatranscriptome | 193 | N |
| F088505 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209086_1001206512 | F027777 | AGGA | MSEELPTFWHQEPANKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRCLNLPTTAKENAEGFGIFDYGQDKQ |
| Ga0209086_1001206515 | F088505 | GGTGG | LFNQKTGIGYNRHGKIASNHNLMVERLVGAGIKAPFIDCEIMGQRTKTGRGTIVVMDAFDPANPKPYEERMKEIEHLEAVTFDVQDNKLLRFVRLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKSLGKYPFITNPNYVSPEWQKQRIRW |
| Ga0209086_100120652 | F024265 | N/A | MNESYVTADAKAKGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGKGKIKRPNKRCHWTEVKEV |
| Ga0209086_100120654 | F010463 | AGAAG | VNHPQELVLAATIHRVKLCEDRIREFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKELVPTYGKYRARGNRSHSVVKKRWEIWKAQHESGLSLRDIANAWGCHPTSVLNAKNRNFKARKATGRNTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |