NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10010276

Scaffold Ga0209086_10010276


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10010276 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6346
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F005206Metagenome / Metatranscriptome408Y
F016253Metagenome / Metatranscriptome248Y
F045750Metagenome / Metatranscriptome152N
F064717Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1001027614F016253GGAGGMSDRIKSLIDSGTGVYSISKKEAGEIHKAAKKIKNYEVSYWTRNRKNKESK
Ga0209086_1001027617F005206N/AMTFKVDRASAEVKPFAAPGEYTVTVNSCKDDGLDKNGNAVATLRYKGPAGEIISDRFVLKDTMMWRLQALISATEANIADGDEFDFSIGGAFLRFLQGFVGLSLVIVIEEEKYIDKHGSEQMTFRVRRMKKVPADLDGI
Ga0209086_100102766F045750N/AMETVMSRIGRMLGLRMHNTNRTVCPVPQSKQTVSSGPDTIAIDKAVSKKTRKLLKHTYMKINDSIIKIKELRLKGYTYKAIGDEMKISKQRVSQIISASKKRDDDKNKWTSGLSTRNVLLMEKLGVEDKATAILLIETREIVPFKWPNFGRRSYHDLCAWLDTQPIDPGLGRHCPHCGKTSKQ
Ga0209086_100102767F064717AGGAGMLGPVNLFQDPNPRINRRWEAIPEEIKEAILKEHATFTCRELAKKYGISSSCVSNIRNKKNKQTTKQ
Ga0209086_100102769F001259AGGAGGMRDCAFIYVNKSNGIVRVESLDTAKHIDGNPEWKHVATINPHVVLESILRATIKERNLIIKHLLS
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