Scaffold Ga0209086_10006459

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10006459
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8340
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014848	Metagenome / Metatranscriptome	259	Y
F041568	Metagenome / Metatranscriptome	159	Y
F045555	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000645914	F014848	AGGA	MTRYYDTIAEFERDGFTVIVDKTYEDINPRDHFEDDNMDEIIRKIDNGTYEWFMLRVRVLVEGLELGSAYLGGCLYEDAREVLSDGTAEDFIAEAMKEAKSQVYRMSKKFAELSEQVDRENACA
Ga0209086_1000645916	F041568	AGGAG	MFTTDNQTALKEELNLMFSEQGAAFTAGYTNQMAQEMLRLLPKRKQKEFVNQVAAFNGRQLVTVKNCLTGKEVEIRRECQGTCNDPSRELFHTM
Ga0209086_1000645918	F045555	AGGA	MTSIFIVRAEDFGAPESIIYGVYPTVELARARMAVLEGEDFGHGIVFYDEVKVGPEGADCEFYNR