Scaffold Ga0209086_10004978

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10004978
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9746
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (87.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018719	Metagenome	233	Y
F041763	Metagenome	159	Y
F049420	Metagenome	146	N
F095158	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000497818	F095158	AGGA	MKQTYIVEFHSTDTESGWSRMEFTSLSKALGFVSVMVKRGCHCQIFQS
Ga0209086_1000497821	F049420	N/A	MSFKNQLMPVKEPLDGGKSDLLCSVDGCNSRWSVRIDGQLPKCSHHQWQQPKVGNTKTYQQYLADKNSPAVPPVSTWYNKEPW
Ga0209086_100049785	F018719	N/A	MTPTFATWDRAVLDKFAMEAYLRLQKQQDQLEQLRSDLKDAIEAYRAVIRKPEFPVGQ
Ga0209086_100049786	F041763	GAGG	VVISEKIRDALAQAPDGMTALELALALKLTPTGVSRSLALMPDTYVDRWVKTTGKYTAVHCLAFVPDDCPHP