NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10002099

Scaffold Ga0209086_10002099


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10002099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15782
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (88.24%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011646Metagenome / Metatranscriptome288Y
F011756Metagenome / Metatranscriptome287Y
F014714Metagenome / Metatranscriptome260N
F018703Metagenome233Y
F029021Metagenome189Y
F061542Metagenome131N
F102505Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1000209910F014714AGGTGGLGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGVWGFDLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF
Ga0209086_1000209914F061542GGAMICELCRSGGELNKTGQFKRAFTMHKKCKEACGCQHQTGPGVGSRAKEMAEPMRTQYPLE
Ga0209086_1000209916F102505GAGGMRRTSQDLYDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMTPVPEGIITTTDILQPVSEVVEEVTTTEENKDVK
Ga0209086_100020993F006842AGGAGMKAKPVICGDCLILLSDCAHGANYLQELKTSAERLIQLAKEREEMK
Ga0209086_100020994F029021GAGGMKDLCQFCGWEIARPDWYHRYNNKLICDNCVMDTMSEREREGANG
Ga0209086_100020995F011756GAGGMAEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSECEDKRVMREKESK
Ga0209086_100020996F011646GAGLELRNGAVKRIIFYEISDAQNIAIWGGESPSEALKWYRESPLDSKIYVQEWLTDEEDAREVSPQIEITSIVLSTIANCMERWSN
Ga0209086_100020997F018703AGGTGGLSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWIDISGSTKSARSRSR

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