Basic Information | |
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Taxon OID | 3300027770 Open in IMG/M |
Scaffold ID | Ga0209086_10002099 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15782 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (88.24%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006842 | Metagenome | 363 | Y |
F011646 | Metagenome / Metatranscriptome | 288 | Y |
F011756 | Metagenome / Metatranscriptome | 287 | Y |
F014714 | Metagenome / Metatranscriptome | 260 | N |
F018703 | Metagenome | 233 | Y |
F029021 | Metagenome | 189 | Y |
F061542 | Metagenome | 131 | N |
F102505 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209086_1000209910 | F014714 | AGGTGG | LGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGVWGFDLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKLEDGILF |
Ga0209086_1000209914 | F061542 | GGA | MICELCRSGGELNKTGQFKRAFTMHKKCKEACGCQHQTGPGVGSRAKEMAEPMRTQYPLE |
Ga0209086_1000209916 | F102505 | GAGG | MRRTSQDLYDGIGTWKRRPIRAGKKTYMPSHKRWGKITVTKMTPVPEGIITTTDILQPVSEVVEEVTTTEENKDVK |
Ga0209086_100020993 | F006842 | AGGAG | MKAKPVICGDCLILLSDCAHGANYLQELKTSAERLIQLAKEREEMK |
Ga0209086_100020994 | F029021 | GAGG | MKDLCQFCGWEIARPDWYHRYNNKLICDNCVMDTMSEREREGANG |
Ga0209086_100020995 | F011756 | GAGG | MAEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSECEDKRVMREKESK |
Ga0209086_100020996 | F011646 | GAG | LELRNGAVKRIIFYEISDAQNIAIWGGESPSEALKWYRESPLDSKIYVQEWLTDEEDAREVSPQIEITSIVLSTIANCMERWSN |
Ga0209086_100020997 | F018703 | AGGTGG | LSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEIEADEKMGKKWIDISGSTKSARSRSR |
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