NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209086_10002096

Scaffold Ga0209086_10002096


Overview

Basic Information
Taxon OID3300027770 Open in IMG/M
Scaffold IDGa0209086_10002096 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15792
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (95.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F014848Metagenome / Metatranscriptome259Y
F022648Metagenome / Metatranscriptome213Y
F041568Metagenome / Metatranscriptome159Y
F045555Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209086_1000209610F045555AGGAMTSIFIVRAEYCGAPESHIYGVYPTVELALARIAVLEGEDFGYEITWYDEVKVGPEGADCALANR
Ga0209086_1000209615F014848AGGAGMTRYYETIAEFERDGYDIIVDKTYEDLSPRDCFDDSVTDIKQLCEDIDSGRYEWFMLRVRVLVEGLELAEEFLGGCLYSDPKEVLSDGTAEDLIDQAMTEAKGHVYRLSRKFTELSYAVDAEGINA
Ga0209086_1000209625F022648AGGAGMKIVHNVQVHPVYAGHINDHKVIREEEFETREDALMWVESYNQHRDNWNINGWLETGNGFKAVYTGAIDDETGENL
Ga0209086_1000209632F000652AGGAMKKVIVETLLTQELEVPDEWDRLDVYDFLGEHQSFRTAFQGVSNEDQSARIIDLGVVTERVTEMGEEAFDE
Ga0209086_100020968F041568AGGAGMFTTDNQTALKAELNLMFSEQGAAFTAGYLNSMAVEMLMLLPKRQQKAFIRQVATFNGRQLVKVKNCLTGQEVEIRREDRGTCNDPSRELFHSM
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