Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10000934 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10000934 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24001
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (84.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

24001

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (84.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022860	Metagenome / Metatranscriptome	212	Y
F023810	Metagenome	208	N
F033008	Metagenome / Metatranscriptome	178	Y
F082345	Metagenome	113	N
F104776	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000093412	F104776	AGAAG	MSTAGALLNRVSRQLLSGTIEERNKLASTVTSSDTSITMSYELNALRAGGVFQLDSELIFIWAADVGTKTLTVERGYADTTAAAHTAGAIAILNPRFPQQQMLEALNQDIDDLSSPLNGLYRVVSVNVDYNGADRQINLTSATSVIDIIDVRLRYLSSDYPVLRGVRLARGLPTSDFASGYAVTFDEQTMAGTLTVRYKAPFVRASTGTSDIQTSCLIPQTMEDILEMGVMARMLSVREVKRNFIESQGDTRRSDEVPAGSMSNSFTNISRLRRDRIIAEAARLARQYPLTIRN
Ga0209086_1000093416	F022860	N/A	MKRLTDLIKDNAWTYAGTGLVLITLSGPTLRQAIWVVGVSLVLHAALTLSTKESE
Ga0209086_1000093424	F082345	N/A	MIPKTIVEITWADTHSGGTGWTPIGGIDQAEYIIASCGYILPVGDGGKENHVTLYQSRSEDDDLDHILHIPVAMIRTIKSVDIPNPVTPTL
Ga0209086_1000093431	F023810	AGG	MSTDTEFELEYWQDRVDALAVTNHALQEERDRYMDAAESLAQELDACKATIKQAESVISRLRNHIAQGVEL
Ga0209086_100009347	F033008	GGAG	MAIFRTPTDNYVTPLLADFDVKGNRLSEEQRLANRLARHRAPTARGRNVFQLTDLSYTENQPSNMATVIKVYYGGHDIEVTAAEVASLTAAGYGSYIS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10000934

Overview

Ecosystem & Geography

Associated Families

Sequences