Scaffold Ga0209086_10000908

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10000908
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24370
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (48.84%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000273	Metagenome / Metatranscriptome	1401	Y
F012434	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000090822	F012434	AGGGGG	MSPTTALTRALILALTAPDQARADRAIALAESIGAGCTAKQVVTAKRNAAKLARA
Ga0209086_100009083	F000273	GAGG	MSDEASKHALIEKAAFAVLPILFSCVVYLMSSLASISHEVTVLRQQVSLVVTSDNKQATNTRAELAREKLRQDLEKEIQHNRDMILENRTSIAVITERIGQFKK