NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10181903

Scaffold Ga0209770_10181903


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10181903 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)837
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F071983Metagenome / Metatranscriptome121Y
F105150Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_101819031F071983N/AVAERWRKHKSRAVNENRMWNLYVYLKSGGLAMNWTHEIIAIVRGRAEAYAYERELVKLFEPELNDQYL
Ga0209770_101819032F006112AGGAGMKQSFTMYIYKKDRRTKTGERLFSTTVWTDRTLEGMEREMRELARDLYPGTDWRFEFVPTMKTVTNLMSGKDVQIAHDTPRSCDPSSELYWSM
Ga0209770_101819033F105150GGAGMYRFVCQMFYKDKLYSGHYWGDEYSQARACKAMAELQRYRPGMRFVLTDYKTGAIIKTTEYEPKQYYIKERTYA

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