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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027769 Open in IMG/M |
| Scaffold ID | Ga0209770_10003891 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7247 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F048262 | Metagenome | 148 | N |
| F048959 | Metagenome / Metatranscriptome | 147 | N |
| F058086 | Metagenome | 135 | N |
| F069861 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209770_1000389110 | F048262 | GAGG | MAAVGDDPVESVSELQPLREAVAECIELLSEQDQFVVNAVNSEMISLEKLGKRLGVSKPHAWRLRNAAYDRLRVHLLAHPIIRERLNLDDDESGYSGF |
| Ga0209770_1000389114 | F069861 | N/A | MTKRRYTGNSDGEAKGLRPGMKVFINEVIKLSNGALWNNGDFGVRKMRGKESLSVHSTGRAVDLSYRHIVNVKDASNTKGIKNGRREAIRILKILVDNAELLGLEAAFDYIVKPHGRAWMCDRGTWLNYKKETIHGGGSGDWIHLEISPSMADDAQKMREAFQNLRLP |
| Ga0209770_100038912 | F048959 | N/A | MRRHEPTLEVSMTLSELRAVIKSLAIGVDQLAKKIQRFAMDERVDSVHTELTELLSAKHEMETVLALALQGDSA |
| Ga0209770_100038919 | F058086 | AGCAG | VKESRWDFPAERRYNFSDDLKFGKKGEELTRDFLQSIADGSFEVKTDRYRNGRMVVETQQNPRGNGWKPSGLDVTEAKWWVYIYCLDGAMLAVNVERLKRYIATLPKGRMKTFAWNSNNPAKGFLLLPEEVMDMMINPEYDFEE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |