Scaffold Ga0209770_10002655

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10002655
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8859
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F056542	Metagenome / Metatranscriptome	137	Y
F101028	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100026554	F014513	N/A	MADTLDEMVEVVKGFVGDSGVCSYDRAVKAVNQARRLLWNKRAWTTQEEYVQICCVNDCFTLPSRYEQIKLAWIGNRPASLSDEWFNATDSHALHADQSCHRGIVEVGGLHVLFRDYTTRFYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRAVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPRTCECITLYASKKYFELTDPKELVEFNADAMIYAVLALNSRENRKAQEFMANLSMAVQEQEKEMEGYEIPTAAPLRIANFQRPENLVGNYLGSPSADDYFFQPSWP
Ga0209770_100026555	F056542	N/A	MTTLKGTDPKLVSGGASTRGTIREGMGNMPNLGAKKPTAFSSKPLPTVGKMVGGSR
Ga0209770_100026557	F101028	N/A	MPTDGSVFDGFTSIVAQDADTHPSYLPEFYVAESVNRTFRGGINQTRPSIRNLRIVAGEGQPSTIVNDIETGNFQGAYPYRKVNEVALGDGLLISVSGKIYFLHIVNNYATAYILPGLTDWNDASLMHTWFVQAEDRVYIQNGYQYAIAWGGVVGAVSATLITKNAYCEIVTVGTTDYTLIGAPSNTVGVKFTATGPATGTGTVAMPAYRLYPSKDQMPIGTIMEYAFGRVFVSDKYNQIYASDIIFGAGFTDTTNTQNFKEITYWAEGGAFSTPAMMGNITSMKVMPYIGGNLRGQGELVVLTTNGAFSMDVSIPRALWNTSNIQRISLLGRGCTSPYVSLVNSELWFRSHDGWSFYSNSQSEFGRFFSLRKLSREVNKWVDLDTKWLKQFASTMYVNNYLVSTVAPQTRKNQAKGLHRYHRGMVVLDLDQTASPSPDANLTFRWNGIWTGFRPTQLLTAQISSEKRGFGFSFDADEKNRLYEITNEHSDDYGPNGTSKIQSFVTTGRYDFNRSGLTNKFIRKKLTGGEMWMSNIPGEVTSRVDYRSDTNQCWSELKAPTTYGCNPCSPTLIDDCIPRRGGNQYKRYKFTTPDPSECNDITGIPSVEGSEFQLKISLTGVATVDRVRIMANIKNNEDSPIGDCPEDQQECAEICCPERYWDYAIYNG