NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10001327

Scaffold Ga0209770_10001327


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10001327 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12922
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042808Metagenome / Metatranscriptome157N
F072266Metagenome / Metatranscriptome121N
F083941Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000132715F042808N/AMVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWVKNLTFLDPEALLNNGYYNAAVESAFKTGYFQGCGSYTNDQGEPYLYVAISGKIFQIDIGNNFLVTDRTPIGGTFLVNTRGRVSNVATYVTAAPHGLAPGMVVRLTQPPGALYPEGFFGDFVVQTIPSPTTFTTYSPGIDAGPLLGPQFTAYWLQANNPFATHVYFQQAENWLIVQDQQSAPYLYNGMVFRRATSDEVPVGGPMAYGKGRLWVARGSEYYGGDLVYGDPIYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLNYPIQRFALLNFGSFNQESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVVRALAYDTEFYLTAASAVNFDNRMLMTIQPEKVNGRGVVHRGMVVMDFDLVSGMGRKLPPAWEGVWTGVDILQMLTVRIQKQERCFVFGLNQGDIGLYEVTKNGQFDFDGFDDAPIDWTIETRSLTFAEPTNKKRLVSAEQWYDQVMGDIESKVYFKANEGECWQPWAEFKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPTRSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSA
Ga0209770_100013272F083941N/AMPEENLHNLEVRIVRLETIIGDKDAGMVSDIHGIKATLEGLKQFQWKLFGGLGVLVVLAQLIGRIGLK
Ga0209770_100013279F072266N/AMIQTPKQEFQRNSQRMEALKRTLDSSDFQAALLAAFNNFCWNLPASENPQHGWNANCRRQGAKALIEELNGLVELRKEKTTTTQNLE

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