Basic Information | |
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Taxon OID | 3300027769 Open in IMG/M |
Scaffold ID | Ga0209770_10001032 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14599 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (26.09%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005633 | Metagenome / Metatranscriptome | 394 | Y |
F006107 | Metagenome / Metatranscriptome | 381 | N |
F006262 | Metagenome / Metatranscriptome | 377 | Y |
F009398 | Metagenome / Metatranscriptome | 318 | N |
F018171 | Metagenome / Metatranscriptome | 236 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209770_1000103215 | F009398 | N/A | MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVTDANNPVAGGFQDNVTSRILVKFSDWKTWDSTLVTMDTTLYTLDQGTEFSRLLKEDGYYLLQENTDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYSLELGAKTR |
Ga0209770_1000103217 | F006107 | N/A | MNAVALRAEKAVADYLAATDWSGSGSGIPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRVDLTNEVEVSVELQLSADDTDEADVLTTVQVLDNRILPLFDDSGASALNAPSNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATL |
Ga0209770_1000103218 | F018171 | N/A | MANTQGSKYIFGSPATLALYDAAGALVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANTTSVANALLSAALPDVNGTCVITGAPVVEVGGYVDAINAATGNRWIYAGGGSIKTTATGKATGTITLKRYTNITATGAATAL |
Ga0209770_100010322 | F006262 | N/A | MFTFTVAIKRSYLRAVYSTLGGVTLLAALAAKSASASSVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLLNDYDLAVYYLNQEGVASPTDAQIYTKLMAVVLVAVTSFGGDFSNFRREASYRVGMS |
Ga0209770_100010325 | F005633 | N/A | MRIATTISVDKNGKSKLVAGPDIDASLQRDNFNTANVPEGGKLVLWVQGALAPKVRKG |
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