Scaffold Ga0209770_10000914

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000914
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15549
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F013412	Metagenome / Metatranscriptome	271	N
F018171	Metagenome / Metatranscriptome	236	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000091421	F018171	N/A	MANVQGKKYIYGSPATLALYSSTNGAAVMTGYVSPDMESYDLSHESDTEEVKNSAGEVVGHIAYNNRLTLTVNFVPASATSVDLAKLTAQLPDANGTCIISGAPVIVAGGYADAINADTSNRWIYSGGGSIKTTNTGKATGTITLKRYAGITATGSATVLGT
Ga0209770_1000091424	F007260	N/A	MTVLQGALGNPAFIWQGQLVRCLSTTITDANAVIAGGFQDNVSTRLLVKLEDWRLADSTLVTVDATVWSMDAGCSPDRLLQENSGLLLQENTDRIILTFGKMMPVVGRTLIYDGRTLRIVSAKRDASGGFYILDLAAKTK
Ga0209770_1000091428	F031459	N/A	MQTDTNSNSGVGISLATAAAAGAVSLLPQLTQWFQLGAAVLAFIAAAIGLWKALKK
Ga0209770_100009149	F013412	N/A	MRSLWSKGFGRLHCDAEVIEEDSGKVFLLATVEFETRTLYTGKQYAQRVTFRSFDDQDIARVGELRKGIYMLFDGDTDAVAEKSATGWWYANPRVTGRIVEVMDYASDPISS