NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000230

Scaffold Ga0209770_10000230


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000230 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33490
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (10.20%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002391Metagenome / Metatranscriptome564Y
F003127Metagenome / Metatranscriptome506Y
F004474Metagenome / Metatranscriptome436Y
F089575Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000023019F089575N/AMADDLQFLDSLGISQTELTQPQTAYEKFILGLANEVTAQFQEYIFTNVNNTGGLAQSVVYFPTGALSFEIQADEYYKFQDEGVNPVGQNKFQTPYSFKYPNVSKNHAKAIQQWKGYDLSHAYASASATKNKYGIKPRNITSNVMSNEVLDRIANDLAAVTGLMFEISFTKNTRTWQ
Ga0209770_1000023022F002391N/AMALWEEILTASQGTLIVNDTTEKTIVYDAIFVLEDTVFASIKVGGVDIKAELITTPGTAVKAGAMIRCTGARKFSAIDLTSGSVALIL
Ga0209770_1000023031F003127N/AVSCTLTTGYNDRTCTNGKGGIKSVILFPIASIATGPTLTNNEITTLTVTGEVFQYKLKSNLSSYTAPIRVNKENGTLWYEQSLNMILASDTKELRAEIHLLGQNEVVAIVEKADGTYVALGLDEGLQINDGSEYTSGVLKSDRNGHSIVLAGLENNEVPDVAAGIVATLLTQQSPVV
Ga0209770_1000023034F004474N/AMNYLLSVENLKKLGLIHMNTDTKILSVCIKRSQDMHLQPALGTPLYKALLDRVETSTWTQDYLTLMNDYVVPCLVAFVDFRAAAMLNEKLTNKAVGRQSDETMTANTDTETVHLRDMLRKDAYFYKERLIGFLKDDNGVKYPEYLVCCDDNSCNESMTKDQTGYKPFGWIV
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