Scaffold Ga0209770_10000170

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000170
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38415
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (79.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F034078	Metagenome	175	Y
F058735	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000017034	F034078	AGGA	MSDWKNFININGDFELPNFLYRTINDLMKQALDMGTLLSDDPYKLRAYKEQTKKLFKNKWYDLAQALEFFEIIEQCSCSSARLEANGGKDVYCDICKGARFIISSALTPDEMREVSMFVNAAQNAEVAEKLQKSLMKVLSEHK
Ga0209770_1000017040	F058735	N/A	MDKTKEFRKRLEGLSREDLLEIIKAQDPEYLKQVNRIEWVFKNKLSHINWADGTPVEGREFTNRELALLIDEPFDVDNSLLDMRNIS
Ga0209770_1000017051	F001360	AGGAG	MSLAKFRKVGTKTGAGRFVVSEGIAPSAYILPSVALPTWYSDSEDDRFEIVIPKGTILSVVTDASGDSRFVPANGSGSSVTWGDTISGWNPLAGATPVAGAAGDTQAVAARSVPVGCAQYDLYRPFDKGTSQGAGFIVRGYVEYPMVTNVNADLVAGDLVAADFMGRPRLLSGSDAGTYPWLQVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRSGTYSGKLGIRANLDVTNVVGAFRVNLTL