Scaffold Ga0209134_10091906

Overview

Basic Information

• Taxon OID: 3300027764
• Scaffold ID: Ga0209134_10091906
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F029021	Metagenome	189	Y
F103146	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_100919062	F006842	AGGAGG	MKATPVICGDHLVPISECDCLSYMKEIENSAKRLIQLAKEREEMK
Ga0209134_100919064	F029021	GGAGG	MNICQFCGWEIARLDWYHRYNNKLICDNCVMDTMSEREREEVR
Ga0209134_100919066	F103146	AGG	MSEPRYLSGDEYALNGVEGEEEIGDAGLPDRMWEDED
Ga0209134_100919067	F011646	GAGG	MSNILELRNGALKRIIFYEVSDSQNIAVWGGESAIEALKWYRNSPTGSRIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV