Scaffold Ga0209134_10000109

Overview

Basic Information

• Taxon OID: 3300027764
• Scaffold ID: Ga0209134_10000109
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22725
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (90.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004667	Metagenome	428	Y
F104700	Metagenome	100	N
F104769	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_100001091	F004667	AGG	MSRPPKIDTIQFRRKLDNPKRQILLTVGKGNISQGFENLLALYQHLHSLGYRIDEPFERVGLVTNYVANKQQTQTEDSMVG
Ga0209134_1000010929	F104769	AGGAG	MKFEMEFGYFNDKLVIETHDFDMIKIFHEFVQFQEAHGWAVNYEAVAPLDFEDDEDEEIPPFALNTHEPL
Ga0209134_100001095	F104700	AGG	MKLETISLCGGFNGLYMPHPLGREKFGYFLITDSMGEQPPIVGEKCAIGWYTDDAQFLGYLDVDQWEQL