NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10180483

Scaffold Ga0209088_10180483


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10180483 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)914
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053129Metagenome / Metatranscriptome141N
F081035Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_101804831F081035N/AMDEKYRDLYTWRSWLRTVFDGAVTISGNAAQVTVTGTTLGTDTYADQDYLTVQAAAEVTVLDTVAFTA
Ga0209088_101804832F053129AGGAGMATFGAKALTRIATASQAAFGTAAAIGTATGEILFNETIGSLDLGVTVDLGETISVGKRTAIQANQPTITGKAPILTIAEGPASMRTLPLIFDAIGATTAGTASPYTWTWSPTQGDVDTLVFYSFLVEDGVQKYLVRDAAPTEITLSTDANGLLQAGATFAATTAATSVLAFPTAIPTNPFVAGRLMKLSTDTNFPDKAGTGATAYASIYNFNLSIMTGVGMVTALDGSL

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