Scaffold Ga0209088_10060930

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10060930
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1807
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F034906	Metagenome	173	Y
F053128	Metagenome	141	N
F072283	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100609302	F034906	GAG	MNNTHRVKAAADQAVRQRNYLRARSRALTRLANDYPDVYQLYLEEEKMADESMGKKWLDIDGNTSLTDTRTR
Ga0209088_100609304	F011756	AGGAG	MAEPRYLSGDEYAHTGGYEDLVNCKECAVEYDRTEYRSDTCSDCEDKIIKREKERV
Ga0209088_100609306	F006842	GGAG	MKATPAICGDHLVPISECDCLSYMREAASAAERLIQLTKERENLK
Ga0209088_100609307	F053128	GAGG	MKGYFVIDRQDMGWKEGYLWKSVKEIADSIRDYDDYRELEISNLTHSQVCELWDFEYHRLTPANCNKYGVKPSELTREYV
Ga0209088_100609309	F072283	N/A	ILPNALIIDTDSGILIETGLELGLGGLLQTLEREEA