NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10024654

Scaffold Ga0209088_10024654


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10024654 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3075
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003539Metagenome / Metatranscriptome480Y
F099184Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_100246544F003539AGGTGGMTNYIEEYNDMVQNLAIEYNRKYQMLERDDIAQELWVWFVSHPKKYKEWSTYERKDKDNLIAKSLRNAALKYCEIEKAKKAGYKTNDLYYYDLSVVEAFLPSIITESYEIPAKIQDLNFKFGKGDVTDGNNWLALRSDIATGFYKLPESKQNILRLRFMDEQSEWSIVAKELKTTPDGARMKVQRVLVALTKNLGGFRPFYDSDKVTDE
Ga0209088_100246546F099184AGGAGGMVEVHLTNEEINSCLVFVEAMRNNKQEHNVIDKKFDSKNTSWAVNLMGYLGEKAAAKVYKVAIDDRVLTGGDEGYDLVINNKTVQVKTTTTNQLIFNSKELFSADYAILVTLVGDRTQPHIDSHFIVWGDISKDKFIDVCFEKDFGYGIRYVCNMEDLGQELRTVNV

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