Scaffold Ga0209088_10019859

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10019859
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3490
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F007524	Metagenome / Metatranscriptome	349	Y
F014848	Metagenome / Metatranscriptome	259	Y
F099293	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100198593	F099293	AGGAG	MSDYKQRLDSIMLQLQEIIEEEYEDNDYVQTAFNNLACILDDNPV
Ga0209088_100198595	F006112	AGGAG	MKQDYTMYIYKADRRTKSGERLVSTTVWPDRTAEGMKREINGLYWLYLPKDGYRFECVPTMKTVTNLMSGAQIQIPHDTPRACDPSSELYWTM
Ga0209088_100198596	F014848	GGA	MTNYYDTIAEFERDGYDIIVDKTYEDMHPRDCFDDCCDVEQICEDINSGNLDWFMLRVRVLVEGLELGSAYLGGCLYKDAREVLTDGTAEDFIAEAMVEAKSQVYRLSRKFTELSYAVDAEGATA
Ga0209088_100198598	F007524	N/A	MLNKKEIKLRKVSNTNAVAINKLMLPLISTLAHIDDDNDINMYKMYADDIAHNIAALCVFNTTLDAEVLHDNIMRQDTCPREHFYTVLQYIEDNNLISANAFCCR