Scaffold Ga0209088_10010850

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10010850
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4918
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F027439	Metagenome	194	N
F037564	Metagenome	167	N
F069828	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1001085014	F027439	GGTGG	MKSIYKYARLEVKALAEMLDKNACQPGRLLETNTSPLAWIMNQMLYDKFHGNGWKLNLLTGVFEKV
Ga0209088_1001085017	F037564	AGGAG	MKLWTNNTNAVTVVDDNKLWPRCSYILPDELVNPPFTDAIPVPHLIKPYYPGRAEGGTTAVYRAGAIGDAIMATGVIRYLTETSGGAVDVYCPARNMPLYAGLGARLLPLPPTAEAWASYDAHVVLDDLFSGKVG
Ga0209088_100108504	F002009	AGCAG	MARRIAGPSLSESCQMTAPTIAEMGDAAADIVWRVMGRGSEKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSSPCPDNNGETAADHLERALVRCLFTLAQIKKEVTRL
Ga0209088_100108508	F069828	N/A	MAFGTEWDKVLALTQPRIEDFAKRNQIDFILINRSVMDPKDYNKSLLANILVGRGYEQCIYIDCDCLVAKDCDDFANPKEEGNDGFIAFDEGDFLDRKEGMKKLAAQYGGTITPTYYFNFGVFAIRRKHVGLLSLPPLGTVPNHFGMQTWANIQAHLWDIPLSGLDPAYNCMTSVEDQYGLDRHKDAYIIHYAGQSGDLDKLAATIAADDTKLKELGR