Scaffold Ga0209088_10005987

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10005987
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6891
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005528	Metagenome	397	Y
F019319	Metagenome	230	N
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000598710	F021759	AGAAGG	MDAGLAVVFAAVVAALGGIAVAIIQMRNLANENRTDHAMVQKRLDTVIDMVGKTSAKLTSHLDWHINTSTKEPRKDLKVKQVATRKKK
Ga0209088_100059872	F019319	GGAGG	MTKTDIQDAIRFLEKQYVGVGEQDRLFEVITSLKQELERRNKK
Ga0209088_100059874	F025023	AGAAGG	MTDTFEGRTYDTGVERSCVLQLQSEFDCLRPHQRAMMKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLILSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDESCAEQFAVICRAIRWDEQDIVWNTSTDSFGFPSKEKVGK
Ga0209088_100059878	F005528	AGGA	MRILSAIMATVATLTMSLGIAHAAYAPAQPSVAVIALQPLWQADRLDPIQPIRYRHGDVSWLPSLAKQAGWPDHAIGKLSELVLRESGGCPARRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDLSRNKWAAICRQMNICTQAPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRICKASTTSVP