Scaffold Ga0209088_10003069

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10003069
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9951
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003308	Metagenome / Metatranscriptome	494	Y
F006789	Metagenome / Metatranscriptome	364	Y
F007027	Metagenome	359	Y
F023592	Metagenome / Metatranscriptome	209	Y
F090094	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100030691	F003308	N/A	GESITLSGCGSTFNGTYTITGTIPFSTGTANILPAFNMNLNYWQNPQGYSFVQFAKVAANQNFRRVFPYGTATGDDTKTTTYANTPAINAAALMLAESIWTARFSTQNGGTSVDGYSPSPFKMSNTLMASIRGLLAPYLSPAAMVG
Ga0209088_1000306915	F023592	AGG	MNSLDILIALGACGMGFLFMVIGYSIGFKHGHGEGFLRGRNIAKALRDVELSK
Ga0209088_1000306918	F090094	AGGA	MSDYSEIINVQTMTGKLLKNGEVIAEYKVETCDRCNKISQLDPFGYQKSHSKENLIWFCKECR
Ga0209088_1000306920	F007027	AGG	MELIKFECRKCKKLTNQIDRIVSDNLPPNVKTLQCTLCGCMSVCLVVAFDANV
Ga0209088_100030693	F006789	GGAG	MALTDEEKAFLIKIGQELPIEVKETKTKEILQEKDEA