NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000305

Scaffold Ga0209088_10000305


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000305 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35847
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (69.49%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001774Metagenome / Metatranscriptome636Y
F007166Metagenome / Metatranscriptome356Y
F007848Metagenome343Y
F014955Metagenome258Y
F017107Metagenome242Y
F027399Metagenome194Y
F027764Metagenome193Y
F029048Metagenome / Metatranscriptome189Y
F045569Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000030510F027399GAGMNFTFTWILDKFGFTPKVETFDFPFTPKPVAKKVAKKTVKKATTRKSKIK
Ga0209088_1000030511F045569GAGVEIDPVKFGVTWQKVEAMEYEVAELRKDVKQLLELANKGRGGLWAGMMVVSAISAFVGFISQYLTNK
Ga0209088_1000030516F027764GAGGMQIQIEIVKENKDGSADALVHFDKEGLGMLVEAGIISILRQYIEQEKKAKKGKK
Ga0209088_1000030521F029048GGGGGMLSQIRDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLREVIQACADCCLNETDRNAVLELLN
Ga0209088_1000030525F007166GGAMGELNQLMLEMEERLEIALDNMEFGTEMAQDDIDVIRAACGKPKRNVLLQTVFDDFGNVFGGQNATV
Ga0209088_1000030528F007848GGAMKDFIGSCLLGAFFAAMFVYGIPAKAQTVQLTDAQGFYRGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPPSPPTPMSPRVMQ
Ga0209088_1000030531F014955AGGMGMLEKIIVGATGLGYLIVCLAQLKKGATSNAMIWGGYAFAQIGLWMALK
Ga0209088_1000030534F017107AGGAMSQDYSENYLRIQKLLRCYHNATLKKQYEKATLIAHDLAEETIKLEFSTYAQVKQQWLS
Ga0209088_1000030551F001774AGGAGMALKLNLEQTQFGVPAPQAYARITNFFGTKDQIQVQVAIHFNEDARHGNMATVKENAHYIAIEDLKGDLIPAIYEVLKTFSDYAGAEDI

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