Basic Information | |
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Taxon OID | 3300027763 Open in IMG/M |
Scaffold ID | Ga0209088_10000305 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35847 |
Total Scaffold Genes | 59 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (69.49%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Associated Families | 9 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001774 | Metagenome / Metatranscriptome | 636 | Y |
F007166 | Metagenome / Metatranscriptome | 356 | Y |
F007848 | Metagenome | 343 | Y |
F014955 | Metagenome | 258 | Y |
F017107 | Metagenome | 242 | Y |
F027399 | Metagenome | 194 | Y |
F027764 | Metagenome | 193 | Y |
F029048 | Metagenome / Metatranscriptome | 189 | Y |
F045569 | Metagenome | 152 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209088_1000030510 | F027399 | GAG | MNFTFTWILDKFGFTPKVETFDFPFTPKPVAKKVAKKTVKKATTRKSKIK |
Ga0209088_1000030511 | F045569 | GAG | VEIDPVKFGVTWQKVEAMEYEVAELRKDVKQLLELANKGRGGLWAGMMVVSAISAFVGFISQYLTNK |
Ga0209088_1000030516 | F027764 | GAGG | MQIQIEIVKENKDGSADALVHFDKEGLGMLVEAGIISILRQYIEQEKKAKKGKK |
Ga0209088_1000030521 | F029048 | GGGGG | MLSQIRDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLREVIQACADCCLNETDRNAVLELLN |
Ga0209088_1000030525 | F007166 | GGA | MGELNQLMLEMEERLEIALDNMEFGTEMAQDDIDVIRAACGKPKRNVLLQTVFDDFGNVFGGQNATV |
Ga0209088_1000030528 | F007848 | GGA | MKDFIGSCLLGAFFAAMFVYGIPAKAQTVQLTDAQGFYRGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPPSPPTPMSPRVMQ |
Ga0209088_1000030531 | F014955 | AGG | MGMLEKIIVGATGLGYLIVCLAQLKKGATSNAMIWGGYAFAQIGLWMALK |
Ga0209088_1000030534 | F017107 | AGGA | MSQDYSENYLRIQKLLRCYHNATLKKQYEKATLIAHDLAEETIKLEFSTYAQVKQQWLS |
Ga0209088_1000030551 | F001774 | AGGAG | MALKLNLEQTQFGVPAPQAYARITNFFGTKDQIQVQVAIHFNEDARHGNMATVKENAHYIAIEDLKGDLIPAIYEVLKTFSDYAGAEDI |
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