Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000305 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000305 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35847
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (69.49%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

35847

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (69.49%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001774	Metagenome / Metatranscriptome	636	Y
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F014955	Metagenome	258	Y
F017107	Metagenome	242	Y
F027399	Metagenome	194	Y
F027764	Metagenome	193	Y
F029048	Metagenome / Metatranscriptome	189	Y
F045569	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000030510	F027399	GAG	MNFTFTWILDKFGFTPKVETFDFPFTPKPVAKKVAKKTVKKATTRKSKIK
Ga0209088_1000030511	F045569	GAG	VEIDPVKFGVTWQKVEAMEYEVAELRKDVKQLLELANKGRGGLWAGMMVVSAISAFVGFISQYLTNK
Ga0209088_1000030516	F027764	GAGG	MQIQIEIVKENKDGSADALVHFDKEGLGMLVEAGIISILRQYIEQEKKAKKGKK
Ga0209088_1000030521	F029048	GGGGG	MLSQIRDVIGDKAIISTEPFGVDEERQLIAFEVNDLAAVLREVIQACADCCLNETDRNAVLELLN
Ga0209088_1000030525	F007166	GGA	MGELNQLMLEMEERLEIALDNMEFGTEMAQDDIDVIRAACGKPKRNVLLQTVFDDFGNVFGGQNATV
Ga0209088_1000030528	F007848	GGA	MKDFIGSCLLGAFFAAMFVYGIPAKAQTVQLTDAQGFYRGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPPSPPTPMSPRVMQ
Ga0209088_1000030531	F014955	AGG	MGMLEKIIVGATGLGYLIVCLAQLKKGATSNAMIWGGYAFAQIGLWMALK
Ga0209088_1000030534	F017107	AGGA	MSQDYSENYLRIQKLLRCYHNATLKKQYEKATLIAHDLAEETIKLEFSTYAQVKQQWLS
Ga0209088_1000030551	F001774	AGGAG	MALKLNLEQTQFGVPAPQAYARITNFFGTKDQIQVQVAIHFNEDARHGNMATVKENAHYIAIEDLKGDLIPAIYEVLKTFSDYAGAEDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000305

Overview

Ecosystem & Geography

Associated Families

Sequences