Scaffold Ga0209088_10000298

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000298
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36185
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (66.67%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F019102	Metagenome	231	Y
F025225	Metagenome	202	Y
F026543	Metagenome	197	N
F030060	Metagenome	186	N
F048161	Metagenome	148	N
F093768	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000029819	F048161	AGGGGG	VILGLKIGVGIVLGIVLLNVAFWTCIILAYLLATLFECIGKWIKK
Ga0209088_100002982	F009142	AGGA	MNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISKEDFDATYCQIFEAFYEETPPLFTKIQNNILDTKVYTARITSQTPTIRTAKRAWQRGLRISLICTPSELDDGLRFLDFSEQRNSMYVGVI
Ga0209088_1000029823	F007164	AGGA	MSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLDAIQEIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSPTQWTPAQKTQFIEEARPIVEAYKEAGGEL
Ga0209088_1000029830	F010463	GGAGG	VNDLVLAATIHRVKSCEDKIAQFEQLISTLTAQMAHNRSELASKGLASLVMGTTTPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIAHAWGCHHSSIVNAKSKNFTARKSTGRGIK
Ga0209088_100002984	F005584	AGGTGG	MAGSIPTSYFATDLTYMIQDLYQSVTGLGSTSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0209088_1000029840	F005702	GGA	VIIFLVVFFGLLILQGVRIFAKHIDQQNYERRQFYLYVAAELEKMDKIVAEGNQPKEPELLLPTKNWVGRN
Ga0209088_100002985	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLAQYHGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPADIKIQGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFEGMTSMD
Ga0209088_1000029852	F093768	N/A	MSLLPQSVSRPLRKINPTPAGVGIGAEYINSIIDRIEDLVLTVQSQKPVAGNNIQINYTAQGAVINAVVE
Ga0209088_1000029855	F025225	N/A	MSIELLNHDKFVLRLQQYKDASRRNMARVINDKLGDVAVKAIGTTYRTNTAKIASEIQRVEGRIVTKKVFKPFGLTKSGKVRKRKIGEYAVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGFGGLGMSGGNPPKVGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRAKLTRGDYSLEAIKRLGGGTKAESDKARMEGMIFNRAGDLDTRYYPVRKRAISGAVAVGKPGLEEAVEIVMKDMAVYLARENKGSSDKLKL
Ga0209088_1000029856	F019102	N/A	MSISLDEELNSAFVAPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKSRKEAIKLAWNRDLFREKIMDFIDGKTEADRDAATNIVSNMIEEASKGRVEIIPTPNSPDLGNA
Ga0209088_1000029857	F026543	N/A	MTEAYWGTTNIKVASAVASFGAKPRQLDPVTRTIKEDGSTQATFWFEVGAGAEAKAEMERPWSEMKSDPESPIRYVRAALENRETFLGLLKRSVAVKVVQTKGGQTLLISENATSEQRRAILKHL
Ga0209088_100002987	F030060	GGCGG	MTKGIITSESPEIHWEHLNVAGGRLLDLGCAFWTETERQEANGTTKYFLSQKPEFYMGVDMNQGDIQTLSQQYPQGKFLCEKADSAPQMNTWIKENSITHIKCDIEGDETQLLQIGNVHNLKEITIELHYSDTWLKEFMAWFDSIGFECYRHDSVSFCPEISVIYGRLKC
Ga0209088_100002989	F003049	AGGA	MKNAKPIIGCRKTKKGEDTKGLGIIKFGKSHPDPTKYVKVDITYDEKAEKDLYECGMIALKHDKEAVIQYVIVKALTGYAKCKK