Basic Information | |
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Taxon OID | 3300027763 Open in IMG/M |
Scaffold ID | Ga0209088_10000292 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36570 |
Total Scaffold Genes | 67 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (64.18%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001459 | Metagenome / Metatranscriptome | 690 | Y |
F002009 | Metagenome / Metatranscriptome | 604 | Y |
F002826 | Metagenome / Metatranscriptome | 527 | Y |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F012569 | Metagenome / Metatranscriptome | 279 | N |
F037193 | Metagenome / Metatranscriptome | 168 | Y |
F102823 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209088_1000029211 | F012569 | N/A | MSRALDKFQAQYGFSVGTQGTATAGYWAIQMLENTTFSAISGKYDGTLTGITIGSGNIIYGEFNSYTAGTGKVIGYIAG |
Ga0209088_1000029212 | F010603 | AGGAG | MANEFVRSTRKAKGKALRFDTQGFTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS |
Ga0209088_1000029213 | F004760 | AGGAGG | VRWPRRPTRRLTANMPVYQYLDTRKKSIVELDRSVAERDNVPKHLKRFTVPQRLALVGVGEPLDNPLGANKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD |
Ga0209088_1000029217 | F001459 | GGA | MRKLRAILAFIRHQEWVDEPKWEAEDERALTGFLGTLTGKKLSLILLNLTLRQNASAVEKKADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPTVN |
Ga0209088_1000029240 | F102823 | N/A | VSALLDWIIVGAGLAIGRLLVAIAVITIGIAILAAFFIYEEKTK |
Ga0209088_1000029242 | F037193 | AGGAG | MKTHNEIAMQVKKYWDNDGSRWKLWVEAGGFRTEIFCYDTTDANAYAKCIRELVSHAYQLQSV |
Ga0209088_1000029243 | F002826 | GGA | MEVEAKNRLRWARDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEITGENNENTQRDSNAG |
Ga0209088_1000029257 | F002009 | GGA | MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETGVDHLERALVRSLFVLAQIKKEIPRL |
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