NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000292

Scaffold Ga0209088_10000292


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000292 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36570
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (64.18%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N
F037193Metagenome / Metatranscriptome168Y
F102823Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000029211F012569N/AMSRALDKFQAQYGFSVGTQGTATAGYWAIQMLENTTFSAISGKYDGTLTGITIGSGNIIYGEFNSYTAGTGKVIGYIAG
Ga0209088_1000029212F010603AGGAGMANEFVRSTRKAKGKALRFDTQGFTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0209088_1000029213F004760AGGAGGVRWPRRPTRRLTANMPVYQYLDTRKKSIVELDRSVAERDNVPKHLKRFTVPQRLALVGVGEPLDNPLGANKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD
Ga0209088_1000029217F001459GGAMRKLRAILAFIRHQEWVDEPKWEAEDERALTGFLGTLTGKKLSLILLNLTLRQNASAVEKKADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPTVN
Ga0209088_1000029240F102823N/AVSALLDWIIVGAGLAIGRLLVAIAVITIGIAILAAFFIYEEKTK
Ga0209088_1000029242F037193AGGAGMKTHNEIAMQVKKYWDNDGSRWKLWVEAGGFRTEIFCYDTTDANAYAKCIRELVSHAYQLQSV
Ga0209088_1000029243F002826GGAMEVEAKNRLRWARDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEITGENNENTQRDSNAG
Ga0209088_1000029257F002009GGAMTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETGVDHLERALVRSLFVLAQIKKEIPRL

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