Scaffold Ga0209088_10000235

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000235
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40203
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (85.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F002933	Metagenome / Metatranscriptome	519	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F012214	Metagenome	282	Y
F019121	Metagenome	231	Y
F098944	Metagenome	103	N
F103134	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000023519	F012214	GGA	MYTPLRTPFTSMSFTPDIPSNALGPNEYNIGKNVEADVRSIKKIFGEIQIASTITDMPIFVEGGFRSEISWVYIVATRNSSSQGKWWMITATGITNITPGVGANPSVYLSGYTEDLNITFSWVGNVFFMNDTLSNPMYFLPTSNEITVTSNAAWNYEPSVTSTTAGFVRNYCSPNVGNILVAGNLTKVIGGTTYNYPTTVRWSQAFANTGIPATWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNSTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFNNLNLTYSGRMFMVNNTQKYQIEIYYPDLTSTGWCNKMLAWRYDLQVWNAPKDIQNACMGTEGPRWVDSSPDYFNLSSRATVYAKGGVSSSRLIETAITNAFVGSAIDAQFERTNVTLQTANGPVPYSNKVYVHRLLPEIAGTGKINITVGGANSTAQTPVYGDTGVTNIDTDTPWVPTQQNSVRTVAVKFSSNDATDTWKMSAMNWQATVTEDAF
Ga0209088_1000023530	F003521	AGGA	MKSLVLNIRDYFNRRTKVIDSHKEANVTRKTLVIENGECAKRLLKNDDFALLFNLYRFYLLEMIEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK
Ga0209088_1000023531	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEMDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKIDVDLQNAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTINTIQDQDFVGFYDPMTIHECKSQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWLRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRRMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKVQESGSVTALNIKKAEDIDTDNMFEALAAKRGKLSAVEID
Ga0209088_1000023534	F001059	AGGA	MATYDIDSLKADLPTAKELAQFVYDKVNVSLDLVGKNKEEQYTVAKNALEGKKIPSEYLTEENPYVDKKDQIPADPVKKLPKRDIDLPDEDSLVHFFGATNMPHPLDPQSDKKVHINFKKYNNGVLTYQIMGPLEQIPFGTKVNKYGQTIPEKYTWLDPRTPELVMRRADGTLTEKGRGLYTFLVGEKGGGVWSLIDRDIVSISAKNIADPWA
Ga0209088_1000023535	F103134	GAGG	MYGRVINGGAQMRKGVTKGINDKLTAHAGEDSRREVIAGAVRKAFTVRNLSDQTTNNSNKGKFKTPSVPSKV
Ga0209088_1000023538	F098944	AGG	MFEEIRPEGSTVTSEELKKKARDYAKAKRAQKKAMKLATGQIEPKAIETVPVVDEFDMTAFVPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKV
Ga0209088_1000023539	F001915	AGGA	MEWTLAHPLHDVDDIVDMADSVFGHEADGILTRDRAVFRKHVTVATTVQLFDKSKEFIAVCRGPKIIDTFLGQAEVNDALLGYCWFDRGGYTTYANEEISNAKFHHVDLELSPRLRVRLINEMIDQHILWASQWYIPVVCSTSIRAEHDGFMKIHKKRGFSVNGSYAWIRTEKGLECLKK
Ga0209088_100002354	F000166	N/A	MQNIPSPDDAKLFAQSVRKWQQVLSLGDWRIEKGSKPAKSAMASVEFTPAARLAVYRLGDFGAEKITPDSLDRTALHELLHIFLYDLLCVTADRQASDEDKEMQEHRIINTLEHLLSKDSHGID
Ga0209088_1000023541	F019121	AGG	MAYTLKRSITGLSFEDIKRIYDNNPNMTLRELSNLTGYAIPFLKNLLLDK
Ga0209088_100002358	F002933	N/A	MVQPEGYPNRTDALERRAERLQEEYAQALKMRKVKDKIDDLEFQLYVKKAERNQLSLEIFTNRKLDIFV