Scaffold Ga0209088_10000217

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000217
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42814
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (75.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001008	Metagenome / Metatranscriptome	807	Y
F008554	Metagenome	331	Y
F011224	Metagenome	293	Y
F048781	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000021743	F048781	N/A	MAGWNTIQRLRNIESQIDKLGFKFAKSKHGDWTDDHGALSLVPKDVDSLPIYSRDAELFVGSLERLEDWLAGVRWAREYDIMLSLSDDAKRDKAEQKQRNRNLMRSIKEGKMITGTVE
Ga0209088_1000021750	F001008	GAGG	MSKEQHKKYQWIDGETADRITSLNLKDYRAYLKKELKLWKKNPKSDANPDGYWMHPEDVGINMQTIAALDLIISHFPETSDEIK
Ga0209088_1000021754	F011224	N/A	MAYFDTLGFEWIFDISDYEKKKFWAALKGDTKVDMPIPRYAILRAQANPQRFPEIWAFESDIPRSELEEYARDNPQVLADAIRNCGQNVFKTHKPETVIN
Ga0209088_1000021756	F008554	N/A	MNIEEEMINRAGKQMAQDIDREVLWGMLQGIGWCRVMLPTMGNGEQAVDIIVWLENNCKKAYERNGRDFIFEDTKDANWFILRWGTV