NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000201

Scaffold Ga0209088_10000201


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44587
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (75.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009735Metagenome / Metatranscriptome313Y
F016782Metagenome / Metatranscriptome244Y
F042732Metagenome157Y
F086809Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000020124F086809AGGAGMELDLVDEMNWEDSDKVEIISLEEAGLEEAPLAEETHRHGHVFRNGIHAYLDWYFDGSIENDDY
Ga0209088_1000020127F016782GAGMLPVREKQMDAHMMSTLYAAATESLVSDASATSTFEKMIAVAFTHSSVETFAKDLKDTEKQIKKDFDVSSMPGPWRSAKSVIHGAMKLSIKLIDDNGSYVGKTFLQNKIKELKTPKEEMSAEDYANKVIKNLMNVPEGMDAVKVFKLVKDFVNASGK
Ga0209088_1000020134F009735N/AMQTGIVEAVSTKDVSTKFGTKPTFSMKVNGTWIKCGFKNPNVAVGYEVEFDGVSGTYGVETKSVNILRKADAAPTPSGATTATAVAAPKAAYSGYKEKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFELETSTLDLVINLARKFEAYTAGDIDMMEAMEETQAISE
Ga0209088_1000020156F042732N/AMSSNYSINRDQIISLALRKLGTLEVGSTPDAETIANANMSLNLLVKQLNTDGLKLWKVSELIVPLNASQTNYTLGGNGSDLMYDSLAPTVAITDRPLKVIQGFYRNVTSNPVIDTPVMIVSKQEYNVLGSKFSTGTANTIFYDSKKINGILYVYLTPDAYSEANLELHIIAQMPLNDMTLATDIPDFPNEWMNCLVWNLADQLALEYGVPMNARQEIATRAQTYRTQLDDWNVEVSSTFFQPDFRSTSNNSYGR
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