NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000076

Scaffold Ga0209088_10000076


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000076 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73011
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (67.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015606Metagenome / Metatranscriptome253Y
F019830Metagenome227Y
F020647Metagenome / Metatranscriptome222Y
F024313Metagenome / Metatranscriptome206Y
F103261Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_10000076102F019830AGGAMAKKTARKIELDGETADRITVLNLIDYRAYLKTELNLWKKNPRTETNPDGYWLHPDDVAGNIKAIEALNLIIKHFGEQ
Ga0209088_1000007647F103261AGGAMSRVMLTAAEARVKSLQDVFVIREIRDIEEEILIASASGLVEVIIPRTTTMAKSLGDLDYALATEYFDAWAGSRDDRQKVLQMEKVLKYFSDLGYLIERQTNPTSNATFQWVVAW
Ga0209088_1000007669F020647AGGAGMFETCVNQLVKVTLTNETVKTEWFNGTLFVSTINESQARSVFHRLSSTLGLGKVHVSPIGDTGEYAFDFV
Ga0209088_1000007693F015606N/AMTSFTLDPFYALSREIEATKTKVSDSIFENYKLQVAQTNDINNRAMQVALHDTSALADLKQSVADGTLQTMLAAARTDAAIGQTAMSTQRTIMEQGELTRGLINALNTQNLNTALINTNTALIGGGVNYAGLGLAYGGVNAAYQSANTTSAINAFQSQLAQQGVVNTGTMTGTTQTASPTTIR
Ga0209088_1000007697F024313GGAGMRNFTKQEHLNSIDTNDIGEGIDDFSDPELNEAFGKFCIMDDQCAYNNLLEDMGYDEDEIENEHCTIVHDTVVETLKQVNLVFKNLGLDLEFKSADMVEHVAFMLTGKGDTPEDMAHRIRRLVDNKPV
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