Scaffold Ga0209088_10000030

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000030
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113521
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (12.80%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F002739	Metagenome / Metatranscriptome	533	Y
F010462	Metagenome / Metatranscriptome	303	Y
F016965	Metagenome / Metatranscriptome	243	Y
F022861	Metagenome / Metatranscriptome	212	Y
F038206	Metagenome / Metatranscriptome	166	Y
F042298	Metagenome / Metatranscriptome	158	Y
F046328	Metagenome / Metatranscriptome	151	N
F078619	Metagenome / Metatranscriptome	116	Y
F096923	Metagenome / Metatranscriptome	104	Y
F101004	Metagenome / Metatranscriptome	102	N
F101005	Metagenome / Metatranscriptome	102	N
F102856	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_10000030109	F046328	N/A	MGLSTKDLVNENGGGGMAKTIAPGNHKLRINSIVLEDFQFIDGAKHLVLNVETEPIDGFEGFLIDKDDESKGRYKGQIGRVKASQYAYADGQTKSGIKIQRDRSLMMFLANLSKTTGIMSWFEEQDNKFNTIEDFVKNFSNNAPLKDKYLDFCIAGKEYENKSGYTAYDMWLPKAENNKYAYGNEGSDRILKYDEAKYLKKLEVKPVDNFGDDDDDFSTPGRTSSDFNLD
Ga0209088_10000030111	F101005	N/A	MYNRREKEKELMGIHSKFLEKLKGGYQFTAKTAFYSKGKFGRQIQFFENELNKGADIYVELVDIERDGRGAETNMVPMFWERPLFKYRYNPYFKEEYEVKTSTNSRGEEYSAYVIPTSELVCVNKGSEEIPYNIYESQRTEEPKEQKKISVFPDFEEEFVSKLKTQETDEDVSSILLQIAEGFQKLAQKLK
Ga0209088_10000030113	F101004	N/A	MEDIFLKFVREDITPNSYYVLHCIKNKIIPCSFVNKELETKRLISENWINEDLTLTDKSIIFTTEIDGFFKRSKKKTSKNLLGDNFDDNIKKYSDIFPSIKLSSGKYARSNPKNLENAFRWFFENYDYEWETILLATNKYVLEYRQVNYQYMRTSQYFVRKQSTDKTWDSDLADYCEMILNKPDDEIIFIKERLF
Ga0209088_10000030118	F038206	N/A	MFLAIEFRDKEGPYIEHLNITHITRTSFVNSMNPDAGTRIHLRTGEVLTTPVPMDILQSEIDDCFKSSAALILFNLLAEKARASVVTSDADTLDEQQPGSGAL
Ga0209088_1000003014	F000716	N/A	MKKMYKMEKLKQQVKNYQLNAGKTYTQYESDGYSQYQNYLYKRALYGLNALTKEELDTMCSKKKQRILNVYKRAQRVLNVFKQQVTNQYSNYIFQTLFPKSPWTESMVAYSEVDEKYTNTLTFKDLNIGKSDIISIFISEGILPKNFLSLQEAPVTLPRLKNAAKA
Ga0209088_1000003016	F010462	GAG	MLYQLPNGKVVHLSIDEFLDLTDLDIQFLMSIDYGEHVIDPFTGSAVEKNTREKYIDTDFLPLEDYDANDIASDDLPFDDIIDLEDPLDN
Ga0209088_100000302	F078619	N/A	MPDITMCHGFECPVKEKCKRFTSKPYEYWQAYFLSPPYTITDDKFKCDMFWGDTQDAIMKQLMGIVSGKDGEELPGKK
Ga0209088_1000003021	F096923	N/A	MIMKTIAIVVLWFLFIGVLASFVSCGTTHHCDAYGQTKQVQNKTVSK
Ga0209088_1000003046	F016965	N/A	MIKINEIEYTITGPIEVISDTQLHVETDKGIILVDDTMDVYKELVSQ
Ga0209088_100000305	F042298	N/A	MGRVKEAYIQIMNNNNDMPEDMTLDDFLKMKELNIYNWQEYERAQERTRLQSNKQTDLGETAKDSEGEFIRRK
Ga0209088_1000003069	F002739	N/A	MARVTAGGEKHRVYKKTNKIGKGKPGDIMVNHPTKDKGMWDTINLTKKAGAKTVKQGIAATKKWHRENPYPKPKKNGKV
Ga0209088_100000308	F022861	AGTAG	MRAICIDASNKPSKIPDNEWIIEGEVYTITRIVRMGLQDNKFGVLLKEVKLSSSSFPYELYNAERFLSLDLLSQAFEETKETVKEADLELI
Ga0209088_1000003093	F102856	N/A	MKKNKMKIEFNGQELYINYVSENNSYVLVSKDKEGTLGKFKLDTSDLVGIDVSKLKKVKRGKR