NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209288_10000015

Scaffold Ga0209288_10000015


Overview

Basic Information
Taxon OID3300027762 Open in IMG/M
Scaffold IDGa0209288_10000015 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60420
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (49.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F001881Metagenome / Metatranscriptome622Y
F008358Metagenome / Metatranscriptome334Y
F034149Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0209288_1000001510F000345GAGMTEQQPNEFGKALQEWWDSDACKELQKANKEAKERAIGKYFMLSEEDKIDMVEAITHIMCKAESEGCSHRGLQSELGIYPGGFWVDHLMDVHNALWSYYHDQKKEQEFKDDLDSLENFIDKGVEPD
Ga0209288_1000001515F008358N/AMSSIYIYFVIFFCIAYLIVTDQSVARAFYILTQLARVEYEKTKWWILHNPANPIVKYFIWRRAYKLAKELEKEFKENDKYV
Ga0209288_100000155F034149GAGGMTISQGLVSEENEDPGFEIIHLSFRKKESTHLYGGPVDYYVGNIVFRLTNPDAINRIKYYLQENEELRVAPDLELMEKYYKDLHFVFDKSEELDEEHDGEKYTPLQILNKQGIKDEDVFIRAHRRNTAPLHDFIQYNEKFDCYRMHEYFQDTPVVRGIIQYLQDMKDDKPNPSRTVYHEQFINTLENLCWWWD
Ga0209288_100000157F001881N/AMNGLIFQRRKQLTERSQAFMNAIWEARNSGADTEEKLVSAILKITAENIQFYNAQNNLIVLDKSDMLQLAQELEE

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