Scaffold Ga0209598_10038375

Overview

Basic Information

• Taxon OID: 3300027760
• Scaffold ID: Ga0209598_10038375
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2569
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F036564	Metagenome / Metatranscriptome	169	N
F048123	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_100383751	F036564	GGAG	MKLGRVCVDLNYIVDMDNKEMVEHAIECLYEDLMQGIKYGNITNWIDVIEDKNAKEDMIPEFLLEKENE
Ga0209598_1003837510	F048123	N/A	GEIIEFAGSAIVDKYPDQVQEIMDLFDFKKGEYLVTDESSIGDFEKQNMNPKKLQKFKKKYGFSLTNSSNISKIAERMYNFRPF
Ga0209598_100383752	F032548	N/A	MKHNKEMEKAIRLLEELVNQADEDCPQDCRTMHFVNVLEEASEFIMEYKNTK
Ga0209598_100383759	F034827	N/A	MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL