Scaffold Ga0209598

Basic Information
Taxon OID	3300027760 Open in IMG/M
Scaffold ID	Ga0209598_10020905 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027760 Open in IMG/M

Scaffold ID

Ga0209598_10020905 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3842
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3842

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053831	Metagenome / Metatranscriptome	140	N
F060634	Metagenome	132	N
F062703	Metagenome / Metatranscriptome	130	N
F063331	Metagenome / Metatranscriptome	129	Y
F074452	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209598_1002090511	F074452	GAG	MPTKKNKINMTRLGIDPFTRAETLETQRAQDYWEMSYVDESNRVRYRMSRVLVEEEILDLLYCHGYITANQQVATINQTRRTDDNRGN
Ga0209598_100209052	F053831	GGTGG	MNHWQKLNYLGDKCKPFHIRVDYCDEVVDFRDMYRFDDAVGAEWIDKTEKEIQDGYKYWVILRARVFLAGIEIGSHSLGGLLFDSTEQMESMMKLDFEGIISEAVVNAKHNLRQMSEAMNGVTV
Ga0209598_100209053	F063331	GGAG	MTELDHFALLNDLKSVLDLIDNDELETARTELKDVIDRVQADCDEKHRIYLERVERYLGHVDSALEDKK
Ga0209598_100209054	F062703	GGAGG	MLKKKIDNSNKTGIMVAYIDPSQNVVAVEPGWNMTPVVLAKLLKDLYPNKQDAIELVDSAVLVPVFRKEDYEYLDGFGGVLESNLNFYEHNLRPHIGHLFCHMTGVWKYSDDGIYWDPISEVFKDNSGFHFSEVRDAVEAA
Ga0209598_100209056	F060634	N/A	MIDFIVGFFAVMVFLAFYAYIGYWFLDLKTLPAEHWVSRSVTQIRIFFNDILEPMKWKTRRLDIRILLMLDKLVIRLTNTDYLLLLKKLWAGLVIVYLKTVLFALKLKRLFFEKNENKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209598_10020905

Overview

Ecosystem & Geography

Associated Families

Sequences