Scaffold Ga0209296_1322673

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1322673
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 605
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023834	Metagenome	208	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_13226731	F093528	N/A	KGNTMKEETTTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSRITLSSDVPDKAVNDVVKEIQEEAGE
Ga0209296_13226732	F031792	AGGCGG	MGYEPELNDPIFYEEEEEREIKCFSCSDPLDQDDIVWADCEGQWQVRGKEGNDTAWCVSCLPSEKEKGNE
Ga0209296_13226733	F023834	AGGAG	MNKEYWQAKAELCRDLALIQIEDEDTEKDAGMNLMRMTYALSMVDVYSE