Scaffold Ga0209296_1072998

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1072998
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1712
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004547	Metagenome	433	Y
F006019	Metagenome / Metatranscriptome	383	Y
F071000	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10729983	F004547	AGG	MKVLAYFTVLVIFWLFLIDTPYAKDLVKEMVMVTEAGEIVLTSEECIFKKEGLQGYDYAAYATDKGHPNHEGCWKSDSYEGKHAVFIFFPEINQTAVFDAKLFHPKATI
Ga0209296_10729984	F006019	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPSSKVDFVIVNDPEMYGQYEPPEQGEPHVITISTAKCGHLDTVMKTLCHEIIHMCIYLETPKTEKYTSHKGLFLKLQKRVANHLGFDPKEL
Ga0209296_10729986	F071000	N/A	MIVLNILNFIGLSILKLLVVGMLFLAMGMSLVFLAVMEYLTKALNYLNDIYENQS